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1

Comparing ontology authoring workflows with Protégé: In the laboratory, in the tutorial and in the ‘wild’

Vigo, Markel, Matentzoglu, Nicolas, Jay, Caroline, Stevens, Robert

Journal:

Web Semantics: Science, Services and Agents on the World Wide Web

Year:

2018

Language:

english

File:

PDF, 1.07 MB

english, 2018

2

Measuring expert performance at manually classifying domain entities under upper ontology classes

Stevens, Robert, Lord, Phillip, Malone, James, Matentzoglu, Nicolas

Journal:

Web Semantics: Science, Services and Agents on the World Wide Web

Year:

2019

Language:

english

File:

PDF, 1.46 MB

english, 2019

3

Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources

Köhler, Sebastian, Carmody, Leigh, Vasilevsky, Nicole, Jacobsen, Julius O B, Danis, Daniel, Gourdine, Jean-Philippe, Gargano, Michael, Harris, Nomi L, Matentzoglu, Nicolas, McMurry, Julie A, Osumi-Sut

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 1.22 MB

english, 2018

4

E6AP promotes the degradation of the PML tumor suppressor

Louria-Hayon, I, Alsheich-Bartok, O, Levav-Cohen, Y, Silberman, I, Berger, M, Grossman, T, Matentzoglu, K, Jiang, Y-H, Muller, S, Scheffner, M

Journal:

Cell Death & Differentiation

Year:

2009

Language:

english

File:

PDF, 389 KB

english, 2009

5

Auditory mismatch impairments are characterized by core neural dysfunctions in schizophrenia

Gaebler, Arnim Johannes, Mathiak, Klaus, Koten, Jan Willem, König, Andrea Anna, Koush, Yury, Weyer, David, Depner, Conny, Matentzoglu, Simeon, Edgar, James Christopher, Willmes, Klaus, Zvyagintsev, Mi

Journal:

Year:

2015

Language:

english

File:

PDF, 618 KB

english, 2015

6

Inference Inspector: Improving the verification of ontology authoring actions

Matentzoglu, Nicolas, Vigo, Markel, Jay, Caroline, Stevens, Robert

Journal:

Web Semantics: Science, Services and Agents on the World Wide Web

Year:

2017

Language:

english

File:

PDF, 849 KB

english, 2017

7

The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species

Shefchek, Kent A, Harris, Nomi L, Gargano, Michael, Matentzoglu, Nicolas, Unni, Deepak, Brush, Matthew, Keith, Daniel, Conlin, Tom, Vasilevsky, Nicole, Zhang, Xingmin Aaron, Balhoff, James P, Babb, La

Journal:

Nucleic Acids Research

Year:

2019

Language:

english

File:

PDF, 3.78 MB

english, 2019

8

Mutation of HERC2 causes developmental delay with Angelman-like features

Harlalka, G. V., Baple, E. L., Cross, H., Kuhnle, S., Cubillos-Rojas, M., Matentzoglu, K., Patton, M. A., Wagner, K., Coblentz, R., Ford, D. L., Mackay, D. J. G., Chioza, B. A., Scheffner, M., Rosa, J

Journal:

Journal of Medical Genetics

Year:

2013

Language:

english

File:

PDF, 425 KB

english, 2013

9

MIRO: guidelines for minimum information for the reporting of an ontology

Matentzoglu, Nicolas, Malone, James, Mungall, Chris, Stevens, Robert

Journal:

Journal of Biomedical Semantics

Year:

2018

Language:

english

File:

PDF, 739 KB

english, 2018

10

Physical and Functional Interaction of the HECT Ubiquitin-protein Ligases E6AP and HERC2

Kuhnle, S., Kogel, U., Glockzin, S., Marquardt, A., Ciechanover, A., Matentzoglu, K., Scheffner, M.

Journal:

Journal of Biological Chemistry

Year:

2011

Language:

english

File:

PDF, 2.42 MB

english, 2011

11

UBE1L2, a Novel E1 Enzyme Specific for Ubiquitin

Pelzer, C., Kassner, I., Matentzoglu, K., Singh, R. K., Wollscheid, H.-P., Scheffner, M., Schmidtke, G., Groettrup, M.

Journal:

Journal of Biological Chemistry

Year:

2007

Language:

english

File:

PDF, 892 KB

english, 2007

12

Measuring expert performance at manually classifying domain entities under upper ontology classes

Stevens, Robert, Lord, Phillip, Malone, James, Matentzoglu, Nicolas

Journal:

Web Semantics: Science, Services and Agents on the World Wide Web

Year:

2019

File:

PDF, 1.46 MB

2019

13

Insertional Mutagenesis in Mice Deficient for p15Ink4b, p16Ink4a, p21Cip1, and p27Kip1 Reveals Cancer Gene Interactions and Correlations with Tumor Phenotypes

Kool, J., Uren, A. G., Martins, C. P., Sie, D., de Ridder, J., Turner, G., van Uitert, M., Matentzoglu, K., Lagcher, W., Krimpenfort, P., Gadiot, J., Pritchard, C., Lenz, J., Lund, A. H., Jonkers, J.,

Journal:

Cancer Research

Year:

2010

Language:

english

File:

PDF, 785 KB

english, 2010

14

Ontology-Based Generation of Medical, Multi-term MCQs

Leo, J., Kurdi, G., Matentzoglu, N., Parsia, B., Sattler, U., Forge, S., Donato, G., Dowling, W.

Journal:

International Journal of Artificial Intelligence in Education

Year:

2019

File:

PDF, 4.13 MB

2019

15

The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species

Shefchek, Kent A, Harris, Nomi L, Gargano, Michael, Matentzoglu, Nicolas, Unni, Deepak, Brush, Matthew, Keith, Daniel, Conlin, Tom, Vasilevsky, Nicole, Zhang, Xingmin Aaron, Balhoff, James P, Babb, La

Journal:

Nucleic Acids Research

Year:

2019

File:

PDF, 3.78 MB

2019

16

Role of the ubiquitin ligase E6AP/UBE3A in controlling levels of the synaptic protein Arc

Kuhnle, S., Mothes, B., Matentzoglu, K., Scheffner, M.

Journal:

Proceedings of the National Academy of Sciences

Year:

2013

Language:

english

File:

PDF, 594 KB

english, 2013

17

A comparative study of methods for a priori prediction of MCQ difficulty

Kurdi, Ghader, Leo, Jared, Matentzoglu, Nicolas, Parsia, Bijan, Sattler, Uli, Forge, Sophie, Donato, Gina, Dowling, Will, Gromann, Dagmar

Journal:

Year:

2020

File:

PDF, 258 KB

2020

18

Ubiquitin-fusion protein system: a powerful tool for ectopic protein expression in mammalian cells

Matentzoglu, Konstantin, Scheffner, Martin

Journal:

Year:

2009

Language:

english

File:

PDF, 1.04 MB

english, 2009

19

Non-invasive assessment of the cerebral vasomotor reactivity by means of transcranial doppler sonography during hyper- and hypocapnea

E. B. Ringelstein, W. Grosse, S. Matentzoglu, W. M. Glöckner

Journal:

Journal of Molecular Medicine

Year:

1986

Language:

english

File:

PDF, 256 KB

english, 1986

20

The Role of the Ubiquitin Ligase E6-AP in Human Papillomavirus E6-mediated Degradation of PDZ Domain-containing Proteins

Kuballa, P., Matentzoglu, K., Scheffner, M.

Journal:

Journal of Biological Chemistry

Year:

2007

Language:

english

File:

PDF, 762 KB

english, 2007

21

[IEEE 2014 IEEE 27th International Symposium on Computer-Based Medical Systems (CBMS) - New York, NY, USA (2014.5.27-2014.5.29)] 2014 IEEE 27th International Symposium on Computer-Based Medical Systems - Computable Declarative Representation of Clinical Assessment Scales in EHRs

Casteleiro, Mercedes Arguello, Matentzoglu, Nicolas, Parsia, Bijan, Brandt, Sebastian

Year:

2014

Language:

english

File:

PDF, 373 KB

english, 2014

22

Large-Scale Mutagenesis in p19ARF- and p53-Deficient Mice Identifies Cancer Genes and Their Collaborative Networks

Anthony G. Uren, Jaap Kool, Konstantin Matentzoglu, Jeroen de Ridder, Jenny Mattison, Miranda van Uitert, Wendy Lagcher, Daoud Sie, Ellen Tanger, Tony Cox, Marcel Reinders, Tim J. Hubbard, Jane Rogers

Journal:

Year:

2008

Language:

english

File:

PDF, 1.81 MB

english, 2008

23

Ubiquitin ligase E6-AP and its role in human disease

Matentzoglu, Konstantin, Scheffner, Martin

Journal:

Biochemical Society Transactions

Year:

2008

Language:

english

File:

PDF, 146 KB

english, 2008

24

UBE3A (ubiquitin protein ligase E3A)

Matentzoglu, K, Scheffner, M

Journal:

Atlas of Genetics and Cytogenetics in Oncology and Haematology

Year:

2011

Language:

english

File:

PDF, 23 KB

english, 2011

25

A systematic survey of temporal requirements of bio-health ontologies

Leo, Jared, Matentzoglu, Nicolas, Sattler, Uli, Parsia, Bijan, Hitzler, Pascal

Journal:

Year:

2019

Language:

english

File:

PDF, 573 KB

english, 2019

26

Protein tyrosine phosphatase H1 is a target of the E6 oncoprotein of high-risk genital human papillomaviruses

Topffer, S., Muller-Schiffmann, A., Matentzoglu, K., Scheffner, M., Steger, G.

Journal:

Journal of General Virology

Year:

2007

Language:

english

File:

PDF, 411 KB

english, 2007

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